GPU-accelerated protein sequence alignment for Jamu prediction.
Syam Budi IryantoWisnu Ananta KusumaRifki SadikinI. Wayan A. SwardianaPublished in: IC3INA (2017)
Keyphrases
- gpu accelerated
- sequence alignment
- protein sequences
- protein secondary structure
- multiple sequence alignments
- protein structure prediction
- remote homology detection
- amino acids
- protein classification
- multiple alignment
- multiple sequence alignment
- protein secondary structure prediction
- computational biology
- experimentally determined
- protein structure
- secondary structure
- prediction accuracy
- protein structure and function
- psi blast
- pairwise
- biological sequences
- drug design
- protein function
- amino acid sequences
- sequence analysis
- physico chemical
- computational approaches
- coarse grained
- finite element
- solvent accessibility
- contact map
- protein protein
- real time
- structural motifs
- protein folding
- binding sites
- dynamic programming
- genetic algorithm