Stochastic Local Search for the Optimization of Secondary Structure Packing in Proteins.
Leonidas KapsokalivasPublished in: LION (2010)
Keyphrases
- secondary structure
- stochastic local search
- protein sequences
- amino acid sequences
- amino acids
- predicting protein
- protein structure
- protein folding
- secondary structure of proteins
- protein secondary structure
- computational methods
- sequence similarity
- protein structure prediction
- tertiary structure
- protein function
- satisfiability problem
- multiple sequence alignment
- protein secondary structure prediction
- computational biology
- optimization problems
- structural features
- phase transition
- protein classification
- structural motifs
- psi blast
- random sat instances
- experimentally determined
- rna sequences
- orders of magnitude
- sat problem
- protein protein interactions
- machine learning
- simulated annealing
- evolutionary algorithm
- randomly generated