An enhanced RNA alignment benchmark for sequence alignment programs.
Andreas WilmIndra MainzGerhard StegerPublished in: Algorithms Mol. Biol. (2006)
Keyphrases
- sequence alignment
- multiple alignment
- pairwise
- protein sequences
- multiple sequence alignment
- secondary structure
- dynamic programming
- amino acids
- binding sites
- gpu accelerated
- phylogenetic analysis
- comparative analysis
- graph theoretic
- sequential pattern mining
- genome wide
- protein structure prediction
- rna secondary structures
- protein structure
- genetic algorithm
- data sets