An efficient alignment algorithm for masked sequences.
Jin Wook KimKunsoo ParkPublished in: Theor. Comput. Sci. (2007)
Keyphrases
- sequence alignment
- improved algorithm
- k means
- detection algorithm
- experimental evaluation
- computational complexity
- sequence matching
- recognition algorithm
- high accuracy
- learning algorithm
- search space
- dynamic programming
- preprocessing
- matching algorithm
- clustering method
- hidden markov models
- segmentation algorithm
- theoretical analysis
- computationally efficient
- expectation maximization
- simulated annealing
- optimization algorithm
- cost function
- linear programming
- multiple sequence alignment
- worst case