PRAS: Predicting functional targets of RNA binding proteins based on CLIP-seq peaks.
Jianan LinYuping ZhangWayne N. FrankelZhengqing OuyangPublished in: PLoS Comput. Biol. (2019)
Keyphrases
- predicting protein
- secondary structure
- dna binding
- post transcriptional
- transcription factors
- chip seq
- cis regulatory
- genome wide
- amino acid sequences
- gene expression
- binding sites
- protein sequences
- protein structure
- amino acids
- protein function
- computational methods
- structural motifs
- saccharomyces cerevisiae
- biological processes
- microarray
- protein protein interactions
- component analysis
- protein folding
- rna sequences
- protein function prediction
- video clips
- protein interaction
- gene function
- rna secondary structure prediction
- high throughput sequencing
- sequence similarity
- structural features
- computational biology
- hough transform
- sequence analysis
- target detection
- hiv protease
- multiple alignment
- protein structure prediction
- transcription factor binding sites
- molecular level
- multiple sequence alignment
- immune response
- gene products
- string kernels