Graphical models of residue coupling in protein families.
John ThomasNaren RamakrishnanChris Bailey-KelloggPublished in: BIOKDD (2005)
Keyphrases
- graphical models
- protein families
- amino acids
- protein sequences
- belief propagation
- probabilistic model
- probabilistic inference
- random variables
- probabilistic graphical models
- bayesian networks
- protein structure
- conditional random fields
- map inference
- dna sequences
- approximate inference
- structure learning
- amino acid sequences
- protein function
- conditional independence
- protein structure prediction
- markov networks
- secondary structure
- computational biology
- undirected graphical models
- similarity measure
- chain graphs
- factor graphs
- message passing