Reconstruct transcription networks by combining gene expression correlations with TF binding sites.
Ying-Zhe HsuYuh-Jyh HuPublished in: ISMSE (2003)
Keyphrases
- gene expression
- binding sites
- transcription factors
- cis regulatory
- biological networks
- microarray
- transcriptional regulation
- gene expression data
- regulatory networks
- gene regulation
- dna binding
- microarray data
- biological processes
- signaling pathways
- sequence data
- dna sequences
- drosophila melanogaster
- motif discovery
- saccharomyces cerevisiae
- gene expression patterns
- highly correlated
- genomic data
- transcription factor binding sites
- genome wide
- gene expression profiles
- high throughput
- cell cycle
- component analysis
- gene regulatory networks
- network structure
- gene networks
- protein interaction
- regulatory elements
- differentially expressed
- network model
- co occurrence
- gene selection
- functional modules
- complex networks
- gene expression levels
- differentially expressed genes
- dna microarray
- systems biology
- gene ontology