PStrain: an iterative microbial strains profiling algorithm for shotgun metagenomic sequencing data.
Shuai WangYiqi JiangShuai Cheng LiPublished in: Bioinform. (2021)
Keyphrases
- input data
- objective function
- learning algorithm
- data analysis
- k means
- optimal solution
- data collection
- image data
- data sources
- data sets
- synthetic datasets
- data reduction
- recognition algorithm
- cost function
- preprocessing
- dynamic programming
- database
- incomplete data
- noisy data
- detection algorithm
- high dimensional data
- spatial data
- single scan
- np hard
- training data
- prior information
- matching algorithm
- synthetic data
- probabilistic model
- data distribution
- segmentation algorithm
- computational complexity
- search space
- similarity measure
- knowledge discovery
- iterative optimization