The p53HMM algorithm: using profile hidden markov models to detect p53-responsive genes.
Todd RileyXin YuEduardo D. SontagArnold LevinePublished in: BMC Bioinform. (2009)
Keyphrases
- detection algorithm
- cost function
- learning algorithm
- optimal solution
- times faster
- dynamic programming
- computational complexity
- improved algorithm
- objective function
- k means
- optimization algorithm
- forward backward
- data sets
- recognition algorithm
- np hard
- worst case
- preprocessing
- hidden markov models
- speech recognition
- detection method
- high accuracy
- support vector machine svm
- segmentation algorithm
- simulated annealing
- theoretical analysis
- em algorithm
- matching algorithm
- expectation maximization
- gene expression data
- input data
- search space
- linear programming