FPGA-basierter Protein- und DNA-Sequenzvergleich zur optimierten Datenbanksuche mit dem BLAST-Algorithmus.
Thomas Fabian StarkeTimm BostelmannSergei SawitzkiPublished in: GI-Jahrestagung (2017)
Keyphrases
- sequence alignment
- sequence analysis
- smith waterman
- sequence databases
- binding sites
- protein sequences
- nucleotide sequences
- dna binding
- biological sequences
- amino acids
- dna sequences
- protein structure
- sequence data
- test set
- dna computing
- real time image processing
- digital elevation models
- genomic sequences
- pairwise
- genome sequences
- field programmable gate array
- high speed
- search tools
- protein coding regions
- motion imagery
- terrain modeling
- low cost
- molecular biology
- real time
- signal processing
- subcellular localization
- protein structure prediction
- gel electrophoresis
- hardware implementation
- hardware design
- gene prediction
- water flow
- motif discovery
- statistical significance
- similarity search
- protein folding
- protein protein interactions
- gene expression