Structure-Based Alignment and Consensus Secondary Structures for Three HIV-Related RNA Genomes.
Christopher A. LavenderRobert J. GorelickKevin M. WeeksPublished in: PLoS Comput. Biol. (2015)
Keyphrases
- rna sequences
- secondary structure
- rna secondary structures
- rna molecules
- secondary structure of proteins
- rna secondary structure prediction
- tertiary structure
- structural features
- protein sequences
- sequence similarity
- multiple alignment
- multiple sequence alignment
- computational methods
- genome sequences
- free energy
- dna sequences
- sequence alignment
- sequence analysis
- protein folding
- sequence data
- stochastic context free grammars
- amino acids
- structural motifs
- protein structure
- edit distance