A replica exchange Monte Carlo algorithm for protein folding in the HP model.
Chris ThachukAlena ShmygelskaHolger H. HoosPublished in: BMC Bioinform. (2007)
Keyphrases
- monte carlo
- monte carlo simulation
- probabilistic model
- objective function
- importance sampling
- markov chain
- parameter estimation
- stochastic approximation
- globally optimal
- kalman filter
- computational cost
- dynamic programming
- k means
- annealing algorithm
- monte carlo tree search
- protein folding
- monte carlo method
- em algorithm
- adaptive sampling
- markovian decision
- matrix inversion
- data clustering
- model free
- optimal strategy
- genetic algorithm
- optimal solution
- learning algorithm