Alignment-free Sequence Searching over Whole Genomes Using 3D Random Plot of Query DNA Sequences.
Da-Young LeeHaesung TakHan-Ho KimHwan-Gue ChoPublished in: Informatica (Slovenia) (2018)
Keyphrases
- dna sequences
- genomic sequences
- rna sequences
- protein coding regions
- human genome
- rna secondary structures
- coding regions
- sequence alignment
- sequence patterns
- dna sequencing
- binding sites
- database
- biological sequences
- query processing
- regulatory elements
- protein families
- tandem repeats
- dna computing
- gene structure prediction
- range queries
- nucleotide sequences
- genome sequences
- problems in computational biology
- motif discovery
- sequence analysis
- protein sequences
- data sources
- gene regulation
- transcription factors
- secondary structure
- database systems
- databases