Large-Scale Pairwise Alignments on GPU Clusters: Exploring the Implementation Space.
Huan TruongDa LiKittisak SajjapongseGavin C. ConantMichela BecchiPublished in: J. Signal Process. Syst. (2014)
Keyphrases
- pairwise
- graphics cards
- clustering algorithm
- input space
- cluster of workstations
- real time
- loss function
- dissimilarity matrix
- similarity measure
- small scale
- parallel implementation
- similarity matrix
- graphics processing units
- higher order
- similarity function
- data sets
- pairwise distances
- real world
- pairwise similarities
- sequence alignment
- arbitrary shape
- fuzzy c means
- point sets
- cluster analysis
- input data
- markov random field