Using co-occurrence network structure to extract synonymous gene and protein names from MEDLINE abstracts.
Aaron M. CohenWilliam R. HershChristopher DubayKent A. SpackmanPublished in: BMC Bioinform. (2005)
Keyphrases
- co occurrence
- network structure
- medline abstracts
- manually annotated
- protein interaction
- biomedical literature
- protein protein interactions
- network topology
- annotated corpus
- named entities
- biomedical text
- network analysis
- text mining
- relation extraction
- keywords
- social networks
- wordnet
- semantic similarity
- semantic relations
- semantic relationships
- automatic extraction
- gene expression
- named entity recognition
- protein protein interaction networks
- gene ontology
- complex networks
- related documents
- link prediction
- biological processes
- word sense disambiguation
- biological data
- query terms
- biological networks
- functional modules
- protein interaction networks
- protein complexes
- information extraction systems
- high throughput
- microarray data
- biological knowledge
- microarray