Protein database search of hybrid alignment algorithm based on GPU parallel acceleration.
Wei ZhouZhanxiu CaiBo LianJincai WangJianping MaPublished in: J. Supercomput. (2017)
Keyphrases
- database
- parallel implementation
- search space
- learning algorithm
- search strategy
- parallel computation
- optimal solution
- depth first search
- detection algorithm
- genetic algorithm
- np hard
- exhaustive search
- dynamic programming
- image alignment
- simulated annealing
- cluster of workstations
- real time
- multiple sequence alignment
- remote homology detection
- rna secondary structures
- solution space
- particle swarm optimization
- k means
- evolutionary algorithm
- objective function