Fast SCOP Classification of Structural Class and Fold Using Secondary Structure Mining in Distance Matrix.
Jianyu ShiYan-Ning ZhangPublished in: PRIB (2009)
Keyphrases
- secondary structure
- protein sequences
- protein structure
- distance matrix
- protein classification
- class labels
- remote homology detection
- structural features
- rna sequences
- string kernels
- protein backbone
- machine learning
- experimentally determined
- pattern recognition
- feature extraction
- feature vectors
- contact map
- data mining
- support vector machine
- psi blast
- feature selection
- computational methods
- support vector