G-NEST: a gene neighborhood scoring tool to identify co-conserved, co-expressed genes.
Danielle G. LemayWilliam F. MartinAngie S. HinrichsMonique RijnkelsJ. Bruce GermanIan KorfKatherine S. PollardPublished in: BMC Bioinform. (2012)
Keyphrases
- comparative genomics
- gene expression
- gene expression data
- sequence alignment
- microarray
- escherichia coli
- microarray gene expression data
- microarray data
- gene clusters
- gene ontology
- gene regulatory networks
- rna structures
- regulatory networks
- gene selection
- gene expression levels
- evolutionary history
- binding sites
- disease genes
- gene function
- differentially expressed genes
- gene prediction
- gene networks
- gene expression profiles
- splice site
- biologically meaningful
- transcription factor binding sites
- gene expression analysis
- dna microarray
- microarray datasets
- genomic sequences
- homo sapiens
- alternative splicing
- protein coding regions
- microarray expression data
- dna sequences
- gene sets
- genomic data
- gene expression datasets
- gene regulation
- saccharomyces cerevisiae
- cancer classification
- biological data
- regulatory elements
- phylogenetic analysis
- candidate genes
- coding regions
- sequenced genomes
- interaction networks
- microarray gene
- gene structure prediction