Joint base-calling of two DNA sequences with factor graphs.
Xiaomeng ShiDesmond S. LunJim MeldrimRalf KötterMuriel MédardPublished in: ICASSP (2008)
Keyphrases
- dna sequences
- factor graphs
- message passing
- graphical models
- belief propagation
- tandem repeats
- approximate inference
- human genome
- latent variables
- sequence patterns
- binding sites
- coding regions
- probabilistic inference
- dna computing
- exact inference
- genomic sequences
- probabilistic graphical models
- markov networks
- markov random field
- query processing
- model construction
- bayesian networks
- graph cuts