Accelerating Sequence Alignment to Graphs.

Chirag Jain Sanchit Misra Haowen Zhang Alexander T. Dilthey Srinivas Aluru

Published in: IPDPS (2019)

Keyphrases

sequence alignment
pairwise
protein sequences
dynamic programming
graph matching
amino acids
binding sites
gpu accelerated
multiple alignment
phylogenetic analysis
graph theory
graph mining
multiple sequence alignment
comparative genomics