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Design and implementation of the Smith-Waterman algorithm on the CUDA-compatible GPU.
Yuma Munekawa
Fumihiko Ino
Kenichi Hagihara
Published in:
BIBE (2008)
Keyphrases
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parallel implementation
gpu implementation
dynamic programming
objective function
np hard
graphics processors
graphics processing units
parallel computation
optimal solution
lower bound
support vector machine
multi dimensional
gpu accelerated
smith waterman