Simultaneous Prediction of Interaction Sites on the Protein and Peptide Sides of Complexes through Multilayer Graph Convolutional Networks.
Kailong LiLijun QuanYelu JiangHongjie WuJian WuYan LiYiting ZhouTingfang WuQiang LyuPublished in: J. Chem. Inf. Model. (2023)
Keyphrases
- protein interaction
- protein complexes
- protein interaction networks
- ppi networks
- protein protein interactions
- functional modules
- protein protein interaction networks
- protein function
- predicting protein
- experimentally determined
- protein interaction data
- amino acids
- mass spectrometry
- tandem mass spectra
- biological networks
- protein function prediction
- computational methods
- mhc class ii
- gene expression
- biological data
- systems biology
- network analysis
- subcellular localization
- biological processes
- protein classification
- gene ontology
- interaction networks
- contact map
- complex networks
- drug design
- website
- biological systems
- high throughput
- protein families
- biomedical literature
- clustering coefficient
- signaling pathways
- mass spectra
- binding sites
- graph layout
- network structure
- contact maps
- prediction accuracy
- directed graph
- protein sequences
- bipartite graph
- graph structure
- network topology
- genomic data
- minimum spanning tree
- remote homology detection
- social networks
- computational approaches
- protein structure prediction
- gene regulatory networks