Molecular Dynamics Simulations and Structural Network Analysis of c-Abl and c-Src Kinase Core Proteins: Capturing Allosteric Mechanisms and Communication Pathways from Residue Centrality.
Amanda TseGennady M. VerkhivkerPublished in: J. Chem. Inf. Model. (2015)
Keyphrases
- network analysis
- molecular dynamics simulations
- social network analysis
- protein protein interactions
- amino acids
- molecular dynamics
- terrorist networks
- sequence alignment
- signal transduction pathways
- network structure
- protein structure prediction
- link prediction
- complex networks
- graph theory
- text mining
- protein sequences
- centrality measures
- protein folding
- community detection
- protein protein interaction networks
- sequence similarity
- biological networks
- real world networks
- functional modules
- protein function
- high performance computing
- gene ontology
- social networks
- protein complexes
- secondary structure
- ppi networks
- high throughput
- biological data
- data analysis