Semiglobal Sequence Alignment with Gaps Using GPU.
Thomas C. CarrollJude-Thaddeus OjiakuPrudence W. H. WongPublished in: IEEE ACM Trans. Comput. Biol. Bioinform. (2020)
Keyphrases
- sequence alignment
- gpu accelerated
- pairwise
- dynamic programming
- protein sequences
- real time
- phylogenetic analysis
- amino acids
- multiple sequence alignment
- multiple alignment
- graphics hardware
- binding sites
- parallel computing
- parallel implementation
- comparative genomics
- parallel processing
- smith waterman
- graphics processors
- sequence databases
- machine learning methods
- machine learning