A new algorithm for RNA secondary structure prediction and fast method for prediction of simple H-type pseudoknots.
Oyun-Erdene NamsraiGarmaa DangaasurenKeun Ho RyuPublished in: BIOCOMP (2008)
Keyphrases
- rna secondary structure prediction
- rna secondary structures
- dynamic programming
- objective function
- matching algorithm
- input data
- k means
- prior information
- secondary structure
- similarity measure
- probabilistic model
- parameter estimation
- pairwise
- expectation maximization
- em algorithm
- distance function
- energy function
- neural network
- multiple sequence alignments
- probability distribution
- hidden markov models
- machine learning