On Subset Seeds for Protein Alignment.
Mikhail A. RoytbergAnna GambinLaurent NoéSlawomir LasotaEugenia FurletovaEwa SzczurekGregory KucherovPublished in: IEEE ACM Trans. Comput. Biol. Bioinform. (2009)
Keyphrases
- sequence alignment
- multiple sequence alignment
- protein structure alignment
- protein sequences
- protein structure
- amino acids
- remote homology detection
- proteomic data
- protein structure prediction
- multiple sequence alignments
- contact map
- drug design
- protein function
- protein folding
- image alignment
- protein interaction data
- mass spectrometry data
- feature subset
- data sets
- mass spectrometry
- binding sites
- molecular dynamics
- protein protein interactions
- subcellular localization
- pairwise
- genetic algorithm