Using text mining to extract gene and protein synonyms from biomedical texts.
Duc DuongHisham Al-MubaidPublished in: SEDE (2007)
Keyphrases
- biomedical literature
- text mining
- biological entities
- text documents
- biological knowledge
- protein protein interactions
- automatic extraction
- protein protein interaction networks
- protein interaction
- medline abstracts
- gene ontology terms
- genia corpus
- natural language text
- information retrieval
- biological processes
- information extraction
- biomedical text mining
- gene expression
- topic models
- data mining
- natural language processing
- document clustering
- knowledge discovery
- high throughput
- textual data
- gene ontology
- scientific literature
- regulatory networks
- wordnet
- protein structure
- saccharomyces cerevisiae
- gene function
- homo sapiens
- word sense
- text classification
- biological systems
- co occurrence
- query expansion
- gene expression data
- computational methods
- gene regulatory networks
- protein complexes
- signaling pathways
- systems biology
- genomic sequences
- cellular processes
- dna binding
- protein sequences
- protein function
- microarray
- functional modules
- relation extraction