PLEDGER: Embedded Whole Genome Read Mapping using Algorithm-HW Co-design and Memory-aware Implementation.
Sidharth MaheshwariRishad A. ShafikIan WilsonAlex YakovlevVenkateshwarlu Y. GudurAmit AcharyyaPublished in: DATE (2021)
Keyphrases
- experimental evaluation
- cost function
- learning algorithm
- detection algorithm
- preprocessing
- theoretical analysis
- high accuracy
- memory usage
- parallel implementation
- improved algorithm
- worst case
- significant improvement
- k means
- expectation maximization
- matching algorithm
- memory requirements
- input data
- computational cost
- convergence rate
- times faster
- hardware architecture
- memory space
- optimal solution
- feature space
- lower bound
- recognition algorithm
- data sets
- np hard
- probabilistic model