Clustering exact matches of pairwise sequence alignments by weighted linear regression.
Alvaro J. GonzálezLi LiaoPublished in: BMC Bioinform. (2008)
Keyphrases
- linear regression
- pairwise
- sequence alignment
- global alignment
- hypergraph partitioning
- spectral clustering
- least squares
- clustering algorithm
- regression problems
- similarity function
- regression methods
- linear regression model
- dissimilarity matrix
- clustering method
- multi class
- multiple sequence alignments
- ridge regression
- linear models
- k means
- nonlinear regression
- pairwise constraints
- locally weighted
- data points
- regression method
- semi supervised
- loss function
- markov random field
- regression trees
- approximate matches
- protein sequences
- generalized linear models
- kernel density estimators
- density estimation
- document clustering
- information theoretic
- high dimensional
- training data
- similarity measure