Implementation of Short Read Alignment Algorithm in OpenCL on Xeon Phi Coprocessor.
Xiquan ZhaoChuang LiuGuangming TanPublished in: HPCC/CSS/ICESS (2015)
Keyphrases
- detection algorithm
- learning algorithm
- experimental evaluation
- cost function
- optimal solution
- search space
- improved algorithm
- convergence rate
- times faster
- np hard
- dynamic programming
- computational complexity
- data sets
- computationally efficient
- particle swarm optimization
- high accuracy
- worst case
- similarity measure
- significant improvement
- k means
- simulated annealing
- objective function
- matching algorithm
- recognition algorithm
- preprocessing
- parallel implementation