Families of FPGA-Based Accelerators for BLAST Algorithm with Multi-seeds Detection and Parallel Extension.
Fei XiaYong DouJiaqing XuPublished in: BIRD (2008)
Keyphrases
- detection algorithm
- parallel implementation
- learning algorithm
- optimal solution
- matching algorithm
- detection method
- preprocessing
- cost function
- dynamic programming
- computational cost
- optimization algorithm
- k means
- decision trees
- depth first search
- convergence rate
- expectation maximization
- simulated annealing
- search space
- computational complexity
- particle swarm optimization
- general purpose
- worst case
- np hard
- search algorithm