ABC: a tool to identify SNVs causing allele-specific transcription factor binding from ChIP-Seq experiments.
Swneke D. BaileyCarl VirtanenBenjamin Haibe-KainsMathieu LupienPublished in: Bioinform. (2015)
Keyphrases
- chip seq
- transcription factors
- dna binding
- binding sites
- biclustering algorithms
- genome wide
- gene expression
- microarray
- component analysis
- dna sequences
- computational biology
- systems biology
- high throughput
- highly correlated
- sequence patterns
- transcription factor binding sites
- biological processes
- gene expression data
- gene sets
- biomedical literature
- motif discovery
- saccharomyces cerevisiae
- sequence data
- co occurrence
- biological networks
- protein interaction
- high dimensionality
- regulatory elements