Genetic sequence-based prediction of long-range chromatin interactions suggests a potential role of short tandem repeat sequences in genome organization.
Sarvesh NikumbhNico PfeiferPublished in: BMC Bioinform. (2017)
Keyphrases
- long range
- long range interactions
- sequence analysis
- genomic sequences
- genome sequences
- short range
- human genome
- sequence data
- computational biology
- biological sequences
- sequence alignment
- long range correlations
- multiple sequence alignments
- conditional random fields
- sequence similarity
- dna sequences
- rna structures
- hidden markov models
- copy number
- multiple alignment
- single nucleotide polymorphisms
- genomic data
- protein sequences
- neural network
- reference genome
- protein interaction
- sequence databases
- phylogenetic trees
- genome wide
- machine learning