An Algorithm for Alignment-free Sequence Comparison using Logical Match.
Sanil Shanker KPElizabeth SherlyJim AustinPublished in: CoRR (2014)
Keyphrases
- dynamic programming
- learning algorithm
- sequence alignment
- cost function
- simulated annealing
- improved algorithm
- recognition algorithm
- detection algorithm
- worst case
- computational cost
- input data
- expectation maximization
- optimization algorithm
- significant improvement
- times faster
- convergence rate
- k means
- search space
- similarity measure
- experimental evaluation
- neural network
- tree structure
- forward backward