Pocket to concavity: a tool for the refinement of protein-ligand binding site shape from alpha spheres.
Genki KudoTakumi HiraoRyunosuke YoshinoYasuteru ShigetaTakatsugu HirokawaPublished in: Bioinform. (2023)
Keyphrases
- virtual screening
- protein protein
- binding sites
- drug discovery
- similarity searching
- computational methods
- protein protein interactions
- dna binding
- high throughput
- protein sequences
- sequence data
- sequence alignment
- gene expression
- drug design
- interaction networks
- predicting protein
- dna sequences
- regulatory elements
- transcription factors
- protein interaction
- motif discovery
- protein function
- similarity search
- scoring function
- regulatory networks
- statistical significance
- transcription factor binding sites
- protein structure
- genome sequences