VStrains: De Novo Reconstruction of Viral Strains via Iterative Path Extraction from Assembly Graphs.
Runpeng LuoYu LinPublished in: RECOMB (2023)
Keyphrases
- three dimensional
- drug resistance
- graph theoretic
- reconstruction method
- edge weights
- graph matching
- image reconstruction
- graph theory
- weighted graph
- graph databases
- shortest path
- compressive sensing
- back projection
- openings and closings
- reconstruction process
- discrete tomography
- tandem mass spectra
- directed graph
- information extraction
- sparse reconstruction
- tomographic images
- mass spectrometry
- human genome
- random graphs
- social networks
- sequence data
- graph model