Structure-based prediction of transcription factor binding specificity using an integrative energy function.
Alvin FarrelJonathan MurphyJun-tao GuoPublished in: Bioinform. (2016)
Keyphrases
- energy function
- graph cuts
- energy minimization
- markov random field
- global minimum
- image segmentation
- dna binding
- belief propagation
- energy landscape
- hopfield neural network
- active contours
- biologically inspired
- binding sites
- transcription factors
- transcription factor binding sites
- data sets
- dna sequences
- level set
- natural language processing
- machine learning
- neural network