Protein-protein contact prediction by geometric triangle-aware protein language models.
Peicong LinHuanyu TaoHao LiSheng-You HuangPublished in: Nat. Mac. Intell. (2023)
Keyphrases
- language model
- protein protein
- predicting protein
- protein protein interactions
- drug design
- computational methods
- protein sequences
- protein interaction
- experimentally determined
- predicting protein protein interactions
- language modeling
- protein structure
- protein function
- high throughput
- n gram
- interaction networks
- protein structure prediction
- binding sites
- query expansion
- information retrieval
- probabilistic model
- secondary structure
- protein complexes
- molecular biology
- smoothing methods
- amino acid sequences
- biomedical literature
- amino acids
- computational biology
- protein interaction networks
- mass spectrometry
- network topology
- gene expression
- protein interaction data
- high precision
- systems biology
- data mining
- data analysis
- language models for information retrieval
- gene ontology