Accelerating the Nussinov RNA folding algorithm with CUDA/GPU.
Dar-Jen ChangChristopher KimmerMing OuyangPublished in: ISSPIT (2010)
Keyphrases
- parallel implementation
- np hard
- optimization algorithm
- gpu implementation
- experimental evaluation
- learning algorithm
- preprocessing
- significant improvement
- recognition algorithm
- times faster
- detection algorithm
- rna secondary structure prediction
- processing speed
- similarity measure
- parallel computation
- convergence rate
- worst case
- cost function
- computational complexity
- objective function
- segmentation algorithm
- expectation maximization
- general purpose
- computational cost
- k means