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RNA-Seq Mapping and Detection of Gene Fusions with a Suffix Array Algorithm.

Onur SakaryaHeinz BreuMilan RadovichYongzhi ChenYulei N. WangCatalin C. BarbacioruSowmi UtiramerurPenn P. WhitleyJoel P. BrockmanPaolo VattaZheng ZhangLiviu PopescuMatthew W. MullerVidya KudlingarNriti GargChieh-Yuan LiBenjamin S. KongJohn P. BodeauRobert C. NutterJian GuKelli S. BramlettJeffrey K. IchikawaFiona C. HylandAsim S. Siddiqui
Published in: PLoS Comput. Biol. (2012)
Keyphrases
  • suffix array
  • string matching
  • suffix tree
  • data structure
  • knn
  • nearest neighbor
  • tree structure
  • matching algorithm
  • similarity metric
  • high dimensional