Grow and Graft a Better CUDA pknotsRG for RNA Pseudoknot Free Energy Calculation.
William B. LangdonMark HarmanPublished in: GECCO (Companion) (2015)
Keyphrases
- free energy
- rna sequences
- belief propagation
- competitive learning
- upper bound
- fixed point
- rna secondary structures
- posterior distribution
- approximate inference
- neural network
- information theoretic
- message passing
- secondary structure
- generalized belief propagation
- random variables
- supervised learning
- three dimensional
- computer vision