GPU-BLAST: using graphics processors to accelerate protein sequence alignment.
Panagiotis D. VouzisNikolaos V. SahinidisPublished in: Bioinform. (2011)
Keyphrases
- sequence alignment
- graphics processors
- gpu implementation
- protein sequences
- pairwise
- dynamic programming
- amino acids
- parallel algorithm
- gpu accelerated
- graphics processing units
- protein structure prediction
- binding sites
- multiple alignment
- multiple sequence alignment
- protein function
- real time
- sequence databases
- protein structure