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Zheng Zheng
ORCID
Publication Activity (10 Years)
Years Active: 2011-2023
Publications (10 Years): 8
Top Topics
Virtual Screening
Pairwise
Protein Protein
Base Classifiers
Top Venues
J. Chem. Inf. Model.
J. Comput. Aided Mol. Des.
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Publications
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Zhenhao Liu
,
Kuan Liang
,
Wenlang Liu
,
Tao Jiang
,
Rui Zhou
,
Mojie Duan
,
Zheng Zheng
Molecular Insights on the Conformational Transitions and Activity Regulation of the c-Met Kinase Induced by Ligand Binding.
J. Chem. Inf. Model.
63 (13) (2023)
Wenlang Liu
,
Zhenhao Liu
,
Hao Liu
,
Lance M. Westerhoff
,
Zheng Zheng
Free Energy Calculations Using the Movable Type Method with Molecular Dynamics Driven Protein-Ligand Sampling.
J. Chem. Inf. Model.
62 (22) (2022)
Tao Jiang
,
Zhenhao Liu
,
Wenlang Liu
,
Jiawen Chen
,
Zheng Zheng
,
Mojie Duan
The Conformational Transition Pathways and Hidden Intermediates in DFG-Flip Process of c-Met Kinase Revealed by Metadynamics Simulations.
J. Chem. Inf. Model.
62 (15) (2022)
Zheng Zheng
,
Oleg Y. Borbulevych
,
Hao Liu
,
Jianpeng Deng
,
Roger I. Martin
,
Lance M. Westerhoff
MovableType Software for Fast Free Energy-Based Virtual Screening: Protocol Development, Deployment, Validation, and Assessment.
J. Chem. Inf. Model.
60 (11) (2020)
Jun Pei
,
Zheng Zheng
,
Kenneth M. Merz Jr.
Random Forest Refinement of the KECSA2 Knowledge-Based Scoring Function for Protein Decoy Detection.
J. Chem. Inf. Model.
59 (5) (2019)
Jun Pei
,
Zheng Zheng
,
Hyunji Kim
,
Lin Frank Song
,
Sarah Walworth
,
Margaux R. Merz
,
Kenneth M. Merz Jr.
Random Forest Refinement of Pairwise Potentials for Protein-Ligand Decoy Detection.
J. Chem. Inf. Model.
59 (7) (2019)
Lin Frank Song
,
Nupur Bansal
,
Zheng Zheng
,
Kenneth M. Merz Jr.
Detailed potential of mean force studies on host-guest systems from the SAMPL6 challenge.
J. Comput. Aided Mol. Des.
32 (10) (2018)
Nupur Bansal
,
Zheng Zheng
,
David S. Cerutti
,
Kenneth M. Merz Jr.
On the fly estimation of host-guest binding free energies using the movable type method: participation in the SAMPL5 blind challenge.
J. Comput. Aided Mol. Des.
31 (1) (2017)
Zheng Zheng
,
Kenneth M. Merz Jr.
Development of the Knowledge-Based and Empirical Combined Scoring Algorithm (KECSA) To Score Protein-Ligand Interactions.
J. Chem. Inf. Model.
53 (5) (2013)
Mark L. Benson
,
John C. Faver
,
Melek N. Ucisik
,
Danial S. Dashti
,
Zheng Zheng
,
Kenneth M. Merz Jr.
Prediction of trypsin/molecular fragment binding affinities by free energy decomposition and empirical scores.
J. Comput. Aided Mol. Des.
26 (5) (2012)
Zheng Zheng
,
Kenneth M. Merz Jr.
Ligand Identification Scoring Algorithm (LISA).
J. Chem. Inf. Model.
51 (6) (2011)