Yuefan Deng

Publication Activity (10 Years)

Years Active: 1995-2024
Publications (10 Years): 27

Top Topics

Network Topologies

Special Properties

Metric Learning

Top Venues

J. Comput. Phys.

Comput. Phys. Commun.

J. Supercomput.

Publications

Ziji Zhang, Georgios Kementzidis, Peng Zhang, Leili Zhang, James R. Kozloski, Adam Hansen, Miriam Rafailovich, Marcia Simon, Yuefan Deng
Learning coarse-grained force fields for fibrogenesis modeling. Comput. Phys. Commun. 295 (2024)
Yicong Zhu, Changnian Han, Peng Zhang, Guojing Cong, James R. Kozloski, Chih-Chieh Yang, Leili Zhang, Yuefan Deng
AI-aided multiscale modeling of physiologically-significant blood clots. Comput. Phys. Commun. 287 (2023)
Hong Wang, Yuefan Deng, Shinjae Yoo, Yuewei Lin
Exploring Robust Features for Improving Adversarial Robustness. CoRR (2023)
David Liang, Ziji Zhang, Miriam Rafailovich, Marcia Simon, Yuefan Deng, Peng Zhang
Coarse-Grained Modeling of the SARS-CoV-2 Spike Glycoprotein by Physics-Informed Machine Learning. Comput. 11 (2) (2023)
Changnian Han, Peng Zhang, Yicong Zhu, Guojing Cong, James R. Kozloski, Chih-Chieh Yang, Leili Zhang, Yuefan Deng
Scalable multiscale modeling of platelets with 100 million particles. J. Supercomput. 78 (18) (2022)
Xiaolong Huang, Alexandre F. Ramos, Yuefan Deng
Optimal circulant graphs as low-latency network topologies. CoRR (2022)
Xiaolong Huang, Alexandre F. Ramos, Yuefan Deng
Optimal circulant graphs as low-latency network topologies. J. Supercomput. 78 (11) (2022)
Yicong Zhu, Changnian Han, Peng Zhang, Guojing Cong, James R. Kozloski, Chih-Chieh Yang, Leili Zhang, Yuefan Deng
AI-aided multiscale modeling of physiologically-significant blood clots. CoRR (2022)
Ziji Zhang, Peng Zhang, Peineng Wang, Jawaad Sheriff, Danny Bluestein, Yuefan Deng
Rapid analysis of streaming platelet images by semi-unsupervised learning. Comput. Medical Imaging Graph. 89 (2021)
Changnian Han, Peng Zhang, Danny Bluestein, Guojing Cong, Yuefan Deng
Artificial intelligence for accelerating time integrations in multiscale modeling. J. Comput. Phys. 427 (2021)
Hong Wang, Yuefan Deng, Shinjae Yoo, Haibin Ling, Yuewei Lin
AGKD-BML: Defense Against Adversarial Attack by Attention Guided Knowledge Distillation and Bi-directional Metric Learning. CoRR (2021)
Hong Wang, Yuefan Deng, Shinjae Yoo, Haibin Ling, Yuewei Lin
AGKD-BML: Defense Against Adversarial Attack by Attention Guided Knowledge Distillation and Bi-directional Metric Learning. ICCV (2021)
Yicong Zhu, Peng Zhang, Changnian Han, Guojing Cong, Yuefan Deng
Enabling AI-Accelerated Multiscale Modeling of Thrombogenesis at Millisecond and Molecular Resolutions on Supercomputers. ISC (2021)
Yuefan Deng, Meng Guo, Alexandre F. Ramos, Xiaolong Huang, Zhipeng Xu, Weifeng Liu
Optimal low-latency network topologies for cluster performance enhancement. J. Supercomput. 76 (12) (2020)
Yidan Zhang, Xiaolong Huang, Zhipeng Xu, Yuefan Deng
A Structured Table of Graphs with Symmetries and Other Special Properties. Symmetry 12 (1) (2020)
Keli Xiao, Zeyang Ye, Lihao Zhang, Wenjun Zhou, Yong Ge, Yuefan Deng
Multi-User Mobile Sequential Recommendation for Route Optimization. ACM Trans. Knowl. Discov. Data 14 (5) (2020)
Yidan Zhang, Xiaolong Huang, Zhipeng Xu, Yuefan Deng
A Structured Table of Graphs with Special Properties. CoRR (2019)
Zhipeng Xu, Xiaolong Huang, Yuefan Deng
Enumeration of regular graphs by using the cluster in high efficiency. CoRR (2019)
Lihao Zhang, Zeyang Ye, Yuefan Deng
Parallel MCMC methods for global optimization. Monte Carlo Methods Appl. 25 (3) (2019)
Zeyang Ye, Keli Xiao, Yong Ge, Yuefan Deng
Applying Simulated Annealing and Parallel Computing to the Mobile Sequential Recommendation. IEEE Trans. Knowl. Data Eng. 31 (2) (2019)
Zhipeng Xu, Xiaolong Huang, Yuefan Deng
Optimal Routing for a Family of Scalable Interconnection Networks. CoRR (2019)
Yuefan Deng, Meng Guo, Alexandre F. Ramos, Xiaolong Huang, Zhipeng Xu, Weifeng Liu
Optimal Low-Latency Network Topologies for Cluster Performance Enhancement. CoRR (2019)
Zeyang Ye, Lihao Zhang, Keli Xiao, Wenjun Zhou, Yong Ge, Yuefan Deng
Multi-User Mobile Sequential Recommendation: An Efficient Parallel Computing Paradigm. KDD (2018)
Zeyang Ye, Keli Xiao, Yuefan Deng
A Unified Theory of the Mobile Sequential Recommendation Problem. ICDM (2018)
Alexandre F. Ramos, Yuefan Deng
Symmetry-guided design of topologies for supercomputer networks. CoRR (2017)
Chao Gao, Peng Zhang, Gil Marom, Yuefan Deng, Danny Bluestein
Reducing the effects of compressibility in DPD-based blood flow simulations through severe stenotic microchannels. J. Comput. Phys. 335 (2017)
Peng Zhang, Na Zhang, Chao Gao, Li Zhang, Yu-Xiang Gao, Yuefan Deng, Danny Bluestein
Scalability Test of multiscale fluid-platelet model for three top supercomputers. Comput. Phys. Commun. 204 (2016)
Peng Zhang, Na Zhang, Yuefan Deng, Danny Bluestein
A multiple time stepping algorithm for efficient multiscale modeling of platelets flowing in blood plasma. J. Comput. Phys. 284 (2015)
Na Zhang, Peng Zhang, Li Zhang, Xiao Zhu, Lei Huang, Yuefan Deng
Performance examinations of multiple time-stepping algorithms on stampede supercomputer. XSEDE (2015)
Zeyang Ye, Keli Xiao, Yuefan Deng
Investigation of Simulated Annealing Cooling Schedule for Mobile Recommendations. ICDM Workshops (2015)
Marek T. Michalewicz, Yuefan Deng
Foreword. Supercomput. Front. Innov. 2 (3) (2015)
Li Zhang, Keli Xiao, Qi Liu, Yefan Tao, Yuefan Deng
Modeling Social Attention for Stock Analysis: An Influence Propagation Perspective. ICDM (2015)
Marek T. Michalewicz, Lukasz Orlowski, Yuefan Deng
Creating interconnect topologies by algorithmic edge removal: MOD and SMOD graphs. Supercomput. Front. Innov. 2 (4) (2015)
Peng Zhang, Yuefan Deng, Rui Feng, Xingguo Luo, Jiangxing Wu
Evaluation of Various Networks Configurated by Adding Bypass or Torus Links. IEEE Trans. Parallel Distributed Syst. 26 (4) (2015)
Peng Zhang, Ling Liu, Yuefan Deng
A data-driven paradigm for mapping problems. Parallel Comput. 48 (2015)
Art Sedighi, Yuefan Deng, Peng Zhang
Fariness of task scheduling in high performance computing environments. Scalable Comput. Pract. Exp. 15 (3) (2014)
Peng Zhang, Yu-Xiang Gao, Janet Fierson, Yuefan Deng
Eigenanalysis-based task mapping on parallel computers with cellular networks. Math. Comput. 83 (288) (2014)
Na Zhang, Peng Zhang, Wei Kang, Danny Bluestein, Yuefan Deng
Parameterizing the Morse potential for coarse-grained modeling of blood plasma. J. Comput. Phys. 257 (2014)
Yuefan Deng, Peng Zhang, Carlos Marques, Reid Powell, Li Zhang
Analysis of Linpack and power efficiencies of the world's TOP500 supercomputers. Parallel Comput. 39 (6-7) (2013)
Rui Feng, Peng Zhang, Yuefan Deng
Deadlock-Free Routing Algorithms for 6D Mesh/iBT Interconnection Networks. SNPD (2013)
Peng Zhang, Yuefan Deng
An analysis of the topological properties of the interlaced bypass torus (iBT) networks. Appl. Math. Lett. 25 (12) (2012)
Rui Feng, Peng Zhang, Yuefan Deng
Simulated Performance Evaluation of a 6D Mesh/iBT Interconnect. SNPD (2012)
Peng Zhang, Yuefan Deng
Design and Analysis of Pipelined Broadcast Algorithms for the All-Port Interlaced Bypass Torus Networks. IEEE Trans. Parallel Distributed Syst. 23 (12) (2012)
Peng Zhang, Reid Powell, Yuefan Deng
Interlacing Bypass Rings to Torus Networks for More Efficient Networks. IEEE Trans. Parallel Distributed Syst. 22 (2) (2011)
Yongzhi Chen, Yuefan Deng
A detailed analysis of communication load balance on BlueGene supercomputer. Comput. Phys. Commun. 180 (8) (2009)
Yongzhi Chen, Yuefan Deng
Task mapping on supercomputers with cellular networks. Comput. Phys. Commun. 179 (7) (2008)
Riwei Wang, Hua Zhang, Yuefan Deng, Lei Ming
Efficient Parallel Radiosity for Terascale Applications. CSSE (2) (2008)
Bin Fang, Glenn J. Martyna, Yuefan Deng
A fine grained parallel smooth particle mesh Ewald algorithm for biophysical simulation studies: Application to the 6-D torus QCDOC supercomputer. Comput. Phys. Commun. 177 (4) (2007)
Guowen Han, Yuefan Deng, James Glimm, Glenn J. Martyna
Error and timing analysis of multiple time-step integration methods for molecular dynamics. Comput. Phys. Commun. 176 (4) (2007)
Kwang Jin Oh, Yuefan Deng
An efficient parallel implementation of the smooth particle mesh Ewald method for molecular dynamics simulations. Comput. Phys. Commun. 177 (5) (2007)
Yongzhi Chen, Xin Chen, Yuefan Deng
Simulating botulinum neurotoxin with constant pH molecular dynamics in Generalized Born implicit solvent. Comput. Phys. Commun. 177 (1-2) (2007)
Peter Rissland, Yuefan Deng
Electrostatic force computation for bio-molecules on supercomputers with torus networks. Parallel Comput. 33 (2) (2007)
Bin Fang, Yuefan Deng, Glenn J. Martyna
Performance of the 3D FFT on the 6D network torus QCDOC parallel supercomputer. Comput. Phys. Commun. 176 (8) (2007)
Yuefan Deng, James Glimm, James W. Davenport, X. Cai, E. Santos
Performance Models on QCDOC for Molecular Dynamics with Coulomb Potentials. Int. J. High Perform. Comput. Appl. 18 (2) (2004)
Yuefan Deng, Alex Korobka
The performance of a supercomputer built with commodity components. Parallel Comput. 27 (1-2) (2001)
Yuefan Deng, Carlos Rivera
Approximate energy minimization for large Lennard-Jones clusters. J. Glob. Optim. 16 (4) (2000)
R. Alan McCoy, Yuefan Deng
Parallel Particle Simulations of Thin-Film Deposition. Int. J. High Perform. Comput. Appl. 13 (1) (1999)
Chung-Chiang Chou, Yuefan Deng
Numerical Solutions of a Nonlinear Evolution System with Small Dissipation on Parallel Processors. J. Sci. Comput. 13 (4) (1998)
Mo Mu, Yuefan Deng, Chung-Chiang Chou
Numerical Methods for Simulating Ginzburg-Landau Vortices. SIAM J. Sci. Comput. 19 (4) (1998)
Chung-Chiang Chou, Yuefan Deng
Decomposing 40 billion integers by four tetrahedral numbers. Math. Comput. 66 (218) (1997)
Graham Campbell, Yuefan Deng, James Glimm, Yuan Wang, Qiqing Yu, Moisés Eisenberg, Arthur Grollman
Analysis and prediction of hydrogen bonding in protein-DNA complexes using parallel processors. J. Comput. Chem. 17 (15) (1996)
Yuefan Deng, R. Alan McCoy, Robert B. Marr, Ronald F. Peierls
An Unconventional Method for Load Balancing. PPSC (1995)