Yongchun Zuo

Publication Activity (10 Years)

Years Active: 2009-2024
Publications (10 Years): 25

Top Topics

Physicochemical Properties

Protein Structure

Top Venues

Briefings Bioinform.

Comput. Biol. Medicine

Publications

Zhihao Si, Hanshuang Li, Wenjing Shang, Yanan Zhao, Lingjiao Kong, Chunshen Long, Yongchun Zuo, Zhenxing Feng
SpaNCMG: improving spatial domains identification of spatial transcriptomics using neighborhood-complementary mixed-view graph convolutional network. Briefings Bioinform. 25 (4) (2024)
Pengfei Liang, Hanshuang Li, Chunshen Long, Mingzhu Liu, Jian Zhou, Yongchun Zuo
Chromatin region binning of gene expression for improving embryo cell subtype identification. Comput. Biol. Medicine 170 (2024)
Haoxin Zhang, Meng Chi, Dongqing Su, Yuqiang Xiong, Haodong Wei, Yao Yu, Yongchun Zuo, Lei Yang
A random forest-based metabolic risk model to assess the prognosis and metabolism-related drug targets in ovarian cancer. Comput. Biol. Medicine 153 (2023)
Dongqing Su, Yuqiang Xiong, Shiyuan Wang, Haodong Wei, Jiawei Ke, Honghao Li, Tao Wang, Yongchun Zuo, Lei Yang
Structural deep clustering network for stratification of breast cancer patients through integration of somatic mutation profiles. Comput. Methods Programs Biomed. 242 (2023)
Mingzhu Liu, Jian Zhou, Qilemuge Xi, Yuchao Liang, Haicheng Li, Pengfei Liang, Yuting Guo, Ming Liu, Temuqile Temuqile, Lei Yang, Yongchun Zuo
A computational framework of routine test data for the cost-effective chronic disease prediction. Briefings Bioinform. 24 (2) (2023)
Lei Zheng, Pengfei Liang, Chunshen Long, Haicheng Li, Hanshuang Li, Yuchao Liang, Xiang He, Qilemuge Xi, Yongqiang Xing, Yongchun Zuo
EmAtlas: a comprehensive atlas for exploring spatiotemporal activation in mammalian embryogenesis. Nucleic Acids Res. 51 (D1) (2023)
Min Zou, Honghao Li, Dongqing Su, Yuqiang Xiong, Haodong Wei, Shiyuan Wang, Hongmei Sun, Tao Wang, Qilemuge Xi, Yongchun Zuo, Lei Yang
Integrating somatic mutation profiles with structural deep clustering network for metabolic stratification in pancreatic cancer: a comprehensive analysis of prognostic and genomic landscapes. Briefings Bioinform. 25 (1) (2023)
Lei Zheng, Dongyang Liu, Yuan Alex Li, Siqi Yang, Yuchao Liang, Yongqiang Xing, Yongchun Zuo
RaacFold: a webserver for 3D visualization and analysis of protein structure by using reduced amino acid alphabets. Nucleic Acids Res. 50 (W1) (2022)
Yu Sun, Haicheng Li, Lei Zheng, Jinzhao Li, Yan Hong, Pengfei Liang, Lai-Yu Kwok, Yongchun Zuo, Wenyi Zhang, Heping Zhang
iProbiotics: a machine learning platform for rapid identification of probiotic properties from whole-genome primary sequences. Briefings Bioinform. 23 (1) (2022)
Lei Zheng, Dongyang Liu, Wuritu Yang, Lei Yang, Yongchun Zuo
RaacLogo: a new sequence logo generator by using reduced amino acid clusters. Briefings Bioinform. 22 (3) (2021)
Hao Wang, Pengfei Liang, Lei Zheng, Chunshen Long, Hanshuang Li, Yongchun Zuo
eHSCPr discriminating the cell identity involved in endothelial to hematopoietic transition. Bioinform. 37 (15) (2021)
Qilemuge Xi, Hao Wang, Liuxi Yi, Jian Zhou, Yuchao Liang, Xiaoqing Zhao, Yongchun Zuo
ANPrAod: Identify Antioxidant Proteins by Fusing Amino Acid Clustering Strategy and N -Peptide Combination. Comput. Math. Methods Medicine 2021 (2021)
Zerong Wang, Dongyang Liu, Baofang Xu, Ruixia Tian, Yongchun Zuo
Modular arrangements of sequence motifs determine the functional diversity of KDM proteins. Briefings Bioinform. 22 (3) (2021)
Shiyuan Wang, Yuqiang Xiong, Qi Zhang, Dongqing Su, Chunlu Yu, Yiyin Cao, Yi Pan, Qianzi Lu, Yongchun Zuo, Lei Yang
Clinical significance and immunogenomic landscape analyses of the immune cell signature based prognostic model for patients with breast cancer. Briefings Bioinform. 22 (4) (2021)
Pengfei Liang, Lei Zheng, Chunshen Long, Wuritu Yang, Lei Yang, Yongchun Zuo
HelPredictor models single-cell transcriptome to predict human embryo lineage allocation. Briefings Bioinform. 22 (6) (2021)
Shiyuan Wang, Qi Zhang, Chunlu Yu, Yiyin Cao, Yongchun Zuo, Lei Yang
Immune cell infiltration-based signature for prognosis and immunogenomic analysis in breast cancer. Briefings Bioinform. 22 (2) (2021)
Zijie Sun, Shenghui Huang, Lei Zheng, Pengfei Liang, Wuritu Yang, Yongchun Zuo
ICTC-RAAC: An improved web predictor for identifying the types of ion channel-targeted conotoxins by using reduced amino acid cluster descriptors. Comput. Biol. Chem. 89 (2020)
Na Ta, Hanshuang Li, Shuai Liu, Yongchun Zuo
Mining Key Regulators of Cell Reprogramming and Prediction Research Based on Deep Learning Neural Networks. IEEE Access 8 (2020)
Lei Zheng, Shenghui Huang, Nengjiang Mu, Haoyue Zhang, Jiayu Zhang, Yu Chang, Lei Yang, Yongchun Zuo
RAACBook: a web server of reduced amino acid alphabet for sequence-dependent inference by using Chou's five-step rule. Database J. Biol. Databases Curation 2019 (2019)
Chunshen Long, Wei Li, Pengfei Liang, Shuai Liu, Yongchun Zuo
Transcriptome Comparisons of Multi-Species Identify Differential Genome Activation of Mammals Embryogenesis. IEEE Access 7 (2019)
Dongyang Liu, Guangpeng Li, Yongchun Zuo
Function determinants of TET proteins: the arrangements of sequence motifs with specific codes. Briefings Bioinform. 20 (5) (2019)
Mengye Lu, Shuai Liu, Arun Kumar Sangaiah, Yunpeng Zhou, Zheng Pan, Yongchun Zuo
Nucleosome Positioning With Fractal Entropy Increment of Diversity in Telemedicine. IEEE Access 6 (2018)
Lu-Qiang Zhang, Qian-Zhong Li, Wen Jin, Yongchun Zuo, Shu-Chun Guo
Genome-wide analysis of H3K36me3 and its regulations to cancer-related genes expression in human cell lines. Biosyst. 171 (2018)
Yongchun Zuo, Yuan Li, Yingli Chen, Guangpeng Li, Zhenhe Yan, Lei Yang
PseKRAAC: a flexible web server for generating pseudo K-tuple reduced amino acids composition. Bioinform. 33 (1) (2017)
Dongxue Che, Yang Wang, Weiyang Bai, Leijie Li, Guiyou Liu, Liangcai Zhang, Yongchun Zuo, Shiheng Tao, Jinlian Hua, Mingzhi Liao
Dynamic and modular gene regulatory networks drive the development of gametogenesis. Briefings Bioinform. 18 (4) (2017)
Tao Li, Qian-Zhong Li, Shuai Liu, Guo-Liang Fan, Yongchun Zuo, Yong Peng
PreDNA: accurate prediction of DNA-binding sites in proteins by integrating sequence and geometric structure information. Bioinform. 29 (6) (2013)
Lei Yang, Qianzhong Li, Yongchun Zuo
Prediction of Presynaptic and Postsynaptic Neurotoxins Using Hybrid Approach and Pseudo Amino Acid Composition. BMEI (2009)
Yongchun Zuo, Qianzhong Li
Predicting Plant Pol-II Promoter Based on Subsequence Increment of Overlap Content Diversity. BMEI (2009)