Yanbin Yin

Publication Activity (10 Years)

Years Active: 2004-2024
Publications (10 Years): 29

Top Topics

Top Venues

Nucleic Acids Res.

Briefings Bioinform.

Publications

Xiangxin Zhan, Yanbin Yin, Han Zhang
BERMAD: batch effect removal for single-cell RNA-seq data using a multi-layer adaptation autoencoder with dual-channel framework. Bioinform. 40 (3) (2024)
Minghe Li, Huike Guo, Keao Wang, Chuanze Kang, Yanbin Yin, Han Zhang
AVBAE-MODFR: A novel deep learning framework of embedding and feature selection on multi-omics data for pan-cancer classification. Comput. Biol. Medicine 177 (2024)
Bowen Yang, Minal Khatri, Jinfang Zheng, Jitender S. Deogun, Yanbin Yin
Genome mining for anti-CRISPR operons using machine learning. Bioinform. 39 (5) (2023)
Xiongwen Quan, Mingjing Han, Xia Guo, Zeyuan Li, Han Zhang, Yanbin Yin
Unsupervised Feature Selection by Fusing Spectral Clustering and Locality Preserving Projection. BIBM (2023)
Ved Piyush, Yuchen Yan, Yuzhen Zhou, Yanbin Yin, Souparno Ghosh
A Matrix Ensemble Kalman Filter-based Multi-arm Neural Network to Adequately Approximate Deep Neural Networks. CoRR (2023)
Mingjing Han, Han Zhang, Wei Li, Yanbin Yin
Semantic-guided graph neural network for heterogeneous graph embedding. Expert Syst. Appl. 232 (2023)
Mingjing Han, Yanbin Yin, Han Zhang, Huan Wang
Hierarchical Semantic Augmentation Graph Neural Network for Drug-Disease Association Prediction. BIBM (2023)
Jinfang Zheng, Boyang Hu, Xinpeng Zhang, Qiwei Ge, Yuchen Yan, Jerry Akresi, Ved Piyush, Le Huang, Yanbin Yin
dbCAN-seq update: CAZyme gene clusters and substrates in microbiomes. Nucleic Acids Res. 51 (D1) (2023)
Jinfang Zheng, Qiwei Ge, Yuchen Yan, Xinpeng Zhang, Le Huang, Yanbin Yin
dbCAN3: automated carbohydrate-active enzyme and substrate annotation. Nucleic Acids Res. 51 (W1) (2023)
Chuanze Kang, Han Zhang, Zhuo Liu, Shenwei Huang, Yanbin Yin
LR-GNN: a graph neural network based on link representation for predicting molecular associations. Briefings Bioinform. 23 (1) (2022)
Xiao Wang, Jia Wang, Han Zhang, Shenwei Huang, Yanbin Yin
HDMC: a novel deep learning-based framework for removing batch effects in single-cell RNA-seq data. Bioinform. 38 (5) (2022)
Tang Li, Yanbin Yin
Critical assessment of pan-genomic analysis of metagenome-assembled genomes. Briefings Bioinform. 23 (6) (2022)
Wanwan Huang, Han Zhang, Zeyuan Li, Yanbin Yin
Mutual Information Estimation-Based Disentangled Representation Network for Medical Image Fusion. BIBM (2022)
Wei Li, Han Zhang, Minghe Li, Mingjing Han, Yanbin Yin
MGEGFP: a multi-view graph embedding method for gene function prediction based on adaptive estimation with GCN. Briefings Bioinform. 23 (5) (2022)
Chen Jin, Zhuangwei Shi, Han Zhang, Yanbin Yin
Predicting lncRNA-protein interactions based on graph autoencoders and collaborative training. BIBM (2021)
Catherine Ausland, Jinfang Zheng, Haidong Yi, Bowen Yang, Tang Li, Xuehuan Feng, Bo Zheng, Yanbin Yin
dbCAN-PUL: a database of experimentally characterized CAZyme gene clusters and their substrates. Nucleic Acids Res. 49 (Database-Issue) (2021)
Zhuangwei Shi, Han Zhang, Chen Jin, Xiongwen Quan, Yanbin Yin
A representation learning model based on variational inference and graph autoencoder for predicting lncRNA-disease associations. BMC Bioinform. 22 (1) (2021)
Wei Li, Han Zhang, Qingqing Zhao, Jian Liu, Yanbin Yin
Adversarial Dual-Channel Variational Graph Autoencoder for Synthetic Lethality Prediction in Human Cancers. BIBM (2021)
Le Huang, Bowen Yang, Haidong Yi, Amina Asif, Jiawei Wang, Trevor Lithgow, Han Zhang, Fayyaz ul Amir Afsar Minhas, Yanbin Yin
AcrDB: a database of anti-CRISPR operons in prokaryotes and viruses. Nucleic Acids Res. 49 (Database-Issue) (2021)
Wei Li, Qingqing Zhao, Han Zhang, Xiongwen Quan, Jing Xu, Yanbin Yin
Bayesian Multi-scale Convolutional Neural Network for Motif Occupancy Identification. BIBM (2020)
Jing Xu, Han Zhang, Jinfang Zheng, Philippe Dovoedo, Yanbin Yin
eCAMI: simultaneous classification and motif identification for enzyme annotation. Bioinform. 36 (7) (2020)
Xiao Wang, Haidong Yi, Jia Wang, Zhandong Liu, Yanbin Yin, Han Zhang
GDASC: a GPU parallel-based web server for detecting hidden batch factors. Bioinform. 36 (14) (2020)
Haidong Yi, Le Huang, Bowen Yang, Javi Gomez, Han Zhang, Yanbin Yin
AcrFinder: genome mining anti-CRISPR operons in prokaryotes and their viruses. Nucleic Acids Res. 48 (Webserver-Issue) (2020)
Xin Su, Jing Xu, Yanbin Yin, Xiongwen Quan, Han Zhang
Antimicrobial peptide identification using multi-scale convolutional network. BMC Bioinform. 20 (1) (2019)
Yanbin Yin, Fang Yang, Xunchun Li, Changyong Pan
Genetic Algorithm Based Optimization Method of Single Frequency Network Planning for DTMB. BMSB (2019)
Han Zhang, Tanner Yohe, Le Huang, Sarah Entwistle, Peizhi Wu, Zhenglu Yang, Peter K. Busk, Ying Xu, Yanbin Yin
dbCAN2: a meta server for automated carbohydrate-active enzyme annotation. Nucleic Acids Res. 46 (Webserver-Issue) (2018)
Le Huang, Han Zhang, Peizhi Wu, Sarah Entwistle, Xueqiong Li, Tanner Yohe, Haidong Yi, Zhenglu Yang, Yanbin Yin
dbCAN-seq: a database of carbohydrate-active enzyme (CAZyme) sequence and annotation. Nucleic Acids Res. 46 (Database-Issue) (2018)
Deng-Shan Wang, Yanbin Yin
Symmetry analysis and reductions of the two-dimensional generalized Benney system via geometric approach. Comput. Math. Appl. 71 (3) (2016)
Alexander Ekstrom, Yanbin Yin
ORFanFinder: automated identification of taxonomically restricted orphan genes. Bioinform. 32 (13) (2016)
Alexander Ekstrom, Rahil Taujale, Nathan McGinn, Yanbin Yin
PlantCAZyme: a database for plant carbohydrate-active enzymes. Database J. Biol. Databases Curation 2014 (2014)
Qin Ma, Bingqiang Liu, Chuan Zhou, Yanbin Yin, Guojun Li, Ying Xu
regulatory motifs at a genome scale. Bioinform. 29 (18) (2013)
Yanbin Yin, Xizeng Mao, Jincai Yang, Xin Chen, Fenglou Mao, Ying Xu
dbCAN: a web resource for automated carbohydrate-active enzyme annotation. Nucleic Acids Res. 40 (Web-Server-Issue) (2012)
Keqian Yan, Wenbo Ding, Liwei Zhang, Yanbin Yin, Fang Yang, Chang-Yong Pan
Measurement and prediction of DTMB reception quality in single frequency networks. IWCMC (2011)
Wen-Chi Chou, Yanbin Yin, Ying Xu
GolgiP: prediction of Golgi-resident proteins in plants. Bioinform. 26 (19) (2010)
Yunjia Chen, Yong Zhang, Yanbin Yin, Ge Gao, Songgang Li, Ying Jiang, Xiaocheng Gu, Jingchu Luo
SPD - a web-based secreted protein database. Nucleic Acids Res. 33 (Database-Issue) (2005)
Bin Wang, Zhuoqun Xu, Cheng Xu, Yanbin Yin, Wenkui Ding, Huashan Yu
A Study of Gridifying Scientific Computing Legacy Codes. GCC (2004)