Tomasz Danel

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 20

Top Topics

Graph Properties

Generative Model

Top Venues

J. Cheminformatics

Publications

Lukasz Maziarka, Dawid Majchrowski, Tomasz Danel, Piotr Gainski, Jacek Tabor, Igor T. Podolak, Pawel M. Morkisz, Stanislaw Jastrzebski
Relative molecule self-attention transformer. J. Cheminformatics 16 (1) (2024)
Dawid Rymarczyk, Daniel Dobrowolski, Tomasz Danel
ProGReST: Prototypical Graph Regression Soft Trees for Molecular Property Prediction. SDM (2023)
Agnieszka Wojtuch, Tomasz Danel, Sabina Podlewska, Lukasz Maziarka
Extended study on atomic featurization in graph neural networks for molecular property prediction. J. Cheminformatics 15 (1) (2023)
Tomasz Danel, Jan Leski, Sabina Podlewska, Igor T. Podolak
Docking-based generative approaches in the search for new drug candidates. CoRR (2023)
Tobiasz Cieplinski, Tomasz Danel, Sabina Podlewska, Stanislaw Jastrzebski
Generative Models Should at Least Be Able to Design Molecules That Dock Well: A New Benchmark. J. Chem. Inf. Model. 63 (11) (2023)
Lukasz Struski, Tomasz Danel, Marek Smieja, Jacek Tabor, Bartosz Zielinski
SONGs: Self-Organizing Neural Graphs. WACV (2023)
Dawid Rymarczyk, Daniel Dobrowolski, Tomasz Danel
ProGReST: Prototypical Graph Regression Soft Trees for Molecular Property Prediction. CoRR (2022)
Piotr Gainski, Lukasz Maziarka, Tomasz Danel, Stanislaw Jastrzebski
HuggingMolecules: An Open-Source Library for Transformer-Based Molecular Property Prediction (Student Abstract). AAAI (2022)
Lukasz Maziarka, Tomasz Danel
Multitask Learning Using BERT with Task-Embedded Attention. IJCNN (2021)
Lukasz Struski, Tomasz Danel, Marek Smieja, Jacek Tabor, Bartosz Zielinski
SONG: Self-Organizing Neural Graphs. CoRR (2021)
Agnieszka Pocha, Tomasz Danel, Sabina Podlewska, Jacek Tabor, Lukasz Maziarka
Comparison of Atom Representations in Graph Neural Networks for Molecular Property Prediction. IJCNN (2021)
Lukasz Maziarka, Dawid Majchrowski, Tomasz Danel, Piotr Gainski, Jacek Tabor, Igor T. Podolak, Pawel Morkisz, Stanislaw Jastrzebski
Relative Molecule Self-Attention Transformer. CoRR (2021)
Tomasz Danel, Marek Smieja, Lukasz Struski, Przemyslaw Spurek, Lukasz Maziarka
Processing of Incomplete Images by (Graph) Convolutional Neural Networks. ICONIP (2) (2020)
Agnieszka Pocha, Tomasz Danel, Lukasz Maziarka
Comparison of Atom Representations in Graph Neural Networks for Molecular Property Prediction. CoRR (2020)
Lukasz Maziarka, Tomasz Danel, Slawomir Mucha, Krzysztof Rataj, Jacek Tabor, Stanislaw Jastrzebski
Molecule Attention Transformer. CoRR (2020)
Tobiasz Cieplinski, Tomasz Danel, Sabina Podlewska, Stanislaw Jastrzebski
We should at least be able to Design Molecules that Dock Well. CoRR (2020)
Tomasz Danel, Przemyslaw Spurek, Jacek Tabor, Marek Smieja, Lukasz Struski, Agnieszka Slowik, Lukasz Maziarka
Spatial Graph Convolutional Networks. ICONIP (5) (2020)
Lukasz Maziarka, Agnieszka Pocha, Jan Kaczmarczyk, Krzysztof Rataj, Tomasz Danel, Michal Warchol
Mol-CycleGAN: a generative model for molecular optimization. J. Cheminformatics 12 (1) (2020)
Tomasz Danel, Marek Smieja, Lukasz Struski, Przemyslaw Spurek, Lukasz Maziarka
Processing of incomplete images by (graph) convolutional neural networks. CoRR (2020)
Przemyslaw Spurek, Tomasz Danel, Jacek Tabor, Marek Smieja, Lukasz Struski, Agnieszka Slowik, Lukasz Maziarka
Geometric Graph Convolutional Neural Networks. CoRR (2019)