Thomas MacCarthy

Publication Activity (10 Years)

Years Active: 2005-2024
Publications (10 Years): 5

Top Topics

Gene Regulatory

Gene Expression Profiling

Microarray Data

Top Venues

PLoS Comput. Biol.

Publications

Wentian Li, Astero Provata, Thomas MacCarthy
An Exhaustive Study of Two-Node McCulloch-Pitts Networks. CoRR (2024)
Guojun Yu, Yingru Wu, Zhi Duan, Catherine Tang, Haipeng Xing, Matthew D. Scharff, Thomas MacCarthy
A Bayesian model based computational analysis of the relationship between bisulfite accessible single-stranded DNA in chromatin and somatic hypermutation of immunoglobulin genes. PLoS Comput. Biol. 17 (9) (2021)
Maxwell Shapiro, Stephen Meier, Thomas MacCarthy
The cytidine deaminase under-representation reporter (CDUR) as a tool to study evolution of sequences under deaminase mutational pressure. BMC Bioinform. 19 (1) (2018)
Maxwell Shapiro, Stephen Meier, Thomas MacCarthy
Correction to: The cytidine deaminase under-representation reporter (CDUR) as a tool to study evolution of sequences under deaminase mutational pressure. BMC Bioinform. 19 (1) (2018)
Jeffrey Chen, Thomas MacCarthy
The preferred nucleotide contexts of the AID/APOBEC cytidine deaminases have differential effects when mutating retrotransposon and virus sequences compared to host genes. PLoS Comput. Biol. 13 (3) (2017)
Jeewoen Shin, Thomas MacCarthy
Antagonistic Coevolution Drives Whack-a-Mole Sensitivity in Gene Regulatory Networks. PLoS Comput. Biol. 11 (10) (2015)
Saurabh Gombar, Thomas MacCarthy, Aviv Bergman
Epigenetics Decouples Mutational from Environmental Robustness. Did It Also Facilitate Multicellularity? PLoS Comput. Biol. 10 (3) (2014)
Mario Pujato, Thomas MacCarthy, András Fiser, Aviv Bergman
The Underlying Molecular and Network Level Mechanisms in the Evolution of Robustness in Gene Regulatory Networks. PLoS Comput. Biol. 9 (1) (2013)
Aviv Bergman, Gil Atzmon, Kenny Ye, Thomas MacCarthy, Nir Barzilai
Buffering Mechanisms in Aging: A Systems Approach Toward Uncovering the Genetic Component of Aging. PLoS Comput. Biol. 3 (8) (2007)
Thomas MacCarthy, Andrew Pomiankowski, Robert M. Seymour
Using large-scale perturbations in gene network reconstruction. BMC Bioinform. 6 (2005)