Sushmita Roy

Publication Activity (10 Years)

Years Active: 2004-2023
Publications (10 Years): 5

Top Topics

Molecular Interactions

Learning Algorithm

Consensus Clustering

Top Venues

PLoS Comput. Biol.

Publications

Brittany Baur, Junha Shin, Jacob Schreiber, Shilu Zhang, Yi Zhang, Mohith Manjunath, Jun S. Song, William Stafford Noble, Sushmita Roy
Leveraging epigenomes and three-dimensional genome organization for interpreting regulatory variation. PLoS Comput. Biol. 19 (7) (2023)
Yann Ponty, Sushmita Roy
ISMB/ECCB 2023 proceedings. Bioinform. 39 (Supplement-1) (2023)
Zhiwei Song, Brittany A Baur, Sushmita Roy
Comparison of deep and shallow graph representation learning algorithms for detecting modules in molecular networks. BIBM (2022)
Zhen Niu, Deborah Chasman, Amie J. Eisfeld, Yoshihiro Kawaoka, Sushmita Roy
Multi-task consensus clustering of genome-wide transcriptomes from related biological conditions. Bioinform. 32 (10) (2016)
Deborah Chasman, Kevin B. Walters, Tiago J. S. Lopes, Amie J. Eisfeld, Yoshihiro Kawaoka, Sushmita Roy
Integrating Transcriptomic and Proteomic Data Using Predictive Regulatory Network Models of Host Response to Pathogens. PLoS Comput. Biol. 12 (7) (2016)
Sergey M. Plis, Jing Sui, Terran Lane, Sushmita Roy, Vincent P. Clark, Vamsi K. Potluru, René J. Huster, Andrew Michael, Scott R. Sponheim, Michael P. Weisend, Vince D. Calhoun
High-order interactions observed in multi-task intrinsic networks are dominant indicators of aberrant brain function in schizophrenia. NeuroImage 102 (2014)
Sushmita Roy, Stephen Lagree, Zhonggang Hou, James A. Thomson, Ron M. Stewart, Audrey P. Gasch
Integrated Module and Gene-Specific Regulatory Inference Implicates Upstream Signaling Networks. PLoS Comput. Biol. 9 (10) (2013)
Sushmita Roy, Margaret Werner-Washburne, Terran Lane
A multiple network learning approach to capture system-wide condition-specific responses. Bioinform. 27 (13) (2011)
Patrick Meyer, Daniel Marbach, Sushmita Roy, Manolis Kellis
Information-Theoretic Inference of Gene Networks Using Backward Elimination. BIOCOMP (2010)
Sushmita Roy, Terran Lane, Margaret Werner-Washburne
Learning structurally consistent undirected probabilistic graphical models. ICML (2009)
Sushmita Roy, Terran Lane, Margaret Werner-Washburne, Diego Martínez
Inference of Functional Networks of Condition-Specific Response--A Case Study Of Quiescence In Yeast. Pacific Symposium on Biocomputing (2009)
Sushmita Roy, Terran Lane, Margaret Werner-Washburne
Integrative Construction and Analysis of Condition-specific Biological Networks. AAAI (2008)
Sushmita Roy, Margaret Werner-Washburne, Terran Lane
A system for generating transcription regulatory networks with combinatorial control of transcription. Bioinform. 24 (10) (2008)
Sushmita Roy, Terran Lane, Margaret Werner-Washburne
Integrative Construction and Analysis of Condition-specific Biological Networks. AAAI (2007)
Sushmita Roy, Terran Lane, Christopher P. Allen, Anthony D. Aragon, Margaret Werner-Washburne
A Hidden-State Markov Model for Cell Population Deconvolution. J. Comput. Biol. 13 (10) (2006)
Peter D. Wentzell, Tobias K. Karakach, Sushmita Roy, M. Juanita Martinez, Christopher P. Allen, Margaret Werner-Washburne
Multivariate curve resolution of time course microarray data. BMC Bioinform. 7 (2006)
Sushmita Roy, Terran Lane, Margaret Werner-Washburne
A datamining approach to cell population deconvolution from gene expressions using particle filters. BIOKDD (2005)
Markus Anderle II, Sushmita Roy, Hua Lin, Christopher Becker, Keith Joho
Quantifying reproducibility for differential proteomics: noise analysis for protein liquid chromatography-mass spectrometry of human serum. Bioinform. 20 (18) (2004)