Shaoyong Lu

Publication Activity (10 Years)

Years Active: 2012-2023
Publications (10 Years): 9

Top Topics

Automatically Discovering

Scientific Discovery

Biological Networks

Top Venues

Nucleic Acids Res.

J. Chem. Inf. Model.

PLoS Comput. Biol.

Publications

Jinyin Zha, Qian Li, Xinyi Liu, Weidong Lin, Tingting Wang, Jiacheng Wei, Ziliang Zhang, Xun Lu, Jing Wu, Duan Ni, Kun Song, Liang Zhang, Xuefeng Lu, Shaoyong Lu, Jian Zhang
AlloReverse: multiscale understanding among hierarchical allosteric regulations. Nucleic Acids Res. 51 (W1) (2023)
Hao Zhang, Duan Ni, Jigang Fan, Minyu Li, Jian Zhang, Chen Hua, Ruth Nussinov, Shaoyong Lu
Markov State Models and Molecular Dynamics Simulations Reveal the Conformational Transition of the Intrinsically Disordered Hypervariable Region of K-Ras4B to the Ordered Conformation. J. Chem. Inf. Model. 62 (17) (2022)
Xinyi Liu, Shaoyong Lu, Kun Song, Qiancheng Shen, Duan Ni, Qian Li, Xinheng He, Hao Zhang, Qi Wang, Yingyi Chen, Xinyi Li, Jing Wu, Chunquan Sheng, Guoqiang Chen, Yaqin Liu, Xuefeng Lu, Jian Zhang
Unraveling allosteric landscapes of allosterome with ASD. Nucleic Acids Res. 48 (Database-Issue) (2020)
Xiaoli An, Shaoyong Lu, Kun Song, Qiancheng Shen, Meilan Huang, Xiaojun Yao, Huanxiang Liu, Jian Zhang
Are the Apo Proteins Suitable for the Rational Discovery of Allosteric Drugs? J. Chem. Inf. Model. 59 (1) (2019)
Kun Song, Qian Li, Wei Gao, Shaoyong Lu, Qiancheng Shen, Xinyi Liu, Yongyan Wu, Binquan Wang, Houwen Lin, Guoqiang Chen, Jian Zhang
AlloDriver: a method for the identification and analysis of cancer driver targets. Nucleic Acids Res. 47 (Webserver-Issue) (2019)
Min Huang, Kun Song, Xinyi Liu, Shaoyong Lu, Qiancheng Shen, Renxiao Wang, Jingze Gao, Yuanyuan Hong, Qian Li, Duan Ni, Jianrong Xu, Guoqiang Chen, Jian Zhang
AlloFinder: a strategy for allosteric modulator discovery and allosterome analyses. Nucleic Acids Res. 46 (Webserver-Issue) (2018)
Kun Song, Xinyi Liu, Wenkang Huang, Shaoyong Lu, Qiancheng Shen, Lu Zhang, Jian Zhang
Improved Method for the Identification and Validation of Allosteric Sites. J. Chem. Inf. Model. 57 (9) (2017)
Shuai Li, Qiancheng Shen, Minyi Su, Xinyi Liu, Shaoyong Lu, Zhongjie Chen, Renxiao Wang, Jian Zhang
Alloscore: a method for predicting allosteric ligand-protein interactions. Bioinform. 32 (10) (2016)
Qiancheng Shen, Guanqiao Wang, Shuai Li, Xinyi Liu, Shaoyong Lu, Zhongjie Chen, Kun Song, Junhao Yan, Lv Geng, Zhimin Huang, Wenkang Huang, Guoqiang Chen, Jian Zhang
ASD v3.0: unraveling allosteric regulation with structural mechanisms and biological networks. Nucleic Acids Res. 44 (Database-Issue) (2016)
Wenkang Huang, Guanqiao Wang, Qiancheng Shen, Xinyi Liu, Shaoyong Lu, Lv Geng, Zhimin Huang, Jian Zhang
ASBench: benchmarking sets for allosteric discovery. Bioinform. 31 (15) (2015)
Zhimin Huang, Linkai Mou, Qiancheng Shen, Shaoyong Lu, Chuangang Li, Xinyi Liu, Guanqiao Wang, Shuai Li, Lv Geng, Yaqin Liu, Jiawei Wu, Guoqiang Chen, Jian Zhang
ASD v2.0: updated content and novel features focusing on allosteric regulation. Nucleic Acids Res. 42 (Database-Issue) (2014)
Shaoyong Lu, Wenkang Huang, Qi Wang, Qiancheng Shen, Shuai Li, Ruth Nussinov, Jian Zhang
The Structural Basis of ATP as an Allosteric Modulator. PLoS Comput. Biol. 10 (9) (2014)
Wenkang Huang, Shaoyong Lu, Zhimin Huang, Xinyi Liu, Linkai Mou, Yu Luo, Yanlong Zhao, Yaqin Liu, Zhongjie Chen, Tingjun Hou, Jian Zhang
Allosite: a method for predicting allosteric sites. Bioinform. 29 (18) (2013)
Ting Shi, Yuhui Han, Weihua Li, Yanlong Zhao, Yaqin Liu, Zhimin Huang, Shaoyong Lu, Jian Zhang
Exploring the Desumoylation Process of SENP1: A Study Combined MD Simulations with QM/MM Calculations on SENP1-SUMO1-RanGAP1. J. Chem. Inf. Model. 53 (9) (2013)
Shaoyong Lu, Wenkang Huang, Xiaobai Li, Zhimin Huang, Xinyi Liu, Yingyi Chen, Ting Shi, Jian Zhang
-Inositol Monophosphatase: Metal Mechanism, Substrate Binding, and Lithium Therapy. J. Chem. Inf. Model. 52 (9) (2012)